AI for the public’s health
Researchers in the College of Public Health and Health Professions are using artificial intelligence tools to improve population health and treatment interventions.
Research Themes
Applied AI
Studies led by faculty in both public health and health professions disciplines explore real-world health issues, including the outcomes of pharmaceutical treatments in large populations, the effects of re-purposing drugs for other health conditions, the impact of environmental contaminants on the risk of diseases, such as cancer, and the use of assistive technology to improve daily life for older adults and people with disabilities.
Ethical AI
Scientists are developing fair and equitable models that not only recognize social bias and health disparity, but also can be acted upon in interventions. Examples include increasing access to care for vulnerable and underserved populations and reducing stigma in order to improve quality of life for people living with HIV.
Interdisciplinary AI
Research across disciplines includes fusing molecular epidemiology and deep learning methods to track and curb transmission of infectious diseases, as well as AI-empowered neurocognitive research.
Methodological AI
Methodological approaches include advancements in machine learning and “causal AI” with strong biostatistical foundations, such as efficient multi-omics big data analysis, deep propensity networks, automated learning of causal effects from large-scale electronic health records, multi-site large clinical trials, and Bayesian dynamic trials.
PHHP AI Leadership
Associate Dean of Artificial Intelligence
Mattia Prosperi PhD, FAMIA, FACMI
- Mailing Address:
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PO Box 100231
2004 MOWRY RD RM 4234
GAINESVILLE FL 32610
- Physical Address:
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2004 MOWRY RD
GAINESVILLE FL 32610
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Fellow of the American College of Medical Informatics (FACMI)2024 · American College of Medical Informatics
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Fellow of the American Medical Informatics Association (FAMIA)2022 · American Medical Informatics Association
Computational epidemiology Bio-health informatics Artificial intelligence Viral – bacterial diseases
- 2025 JAIDS Journal of Acquired Immune Deficiency Syndromes
- 2025 AIDS research and therapy
- 2025 Diabetes, obesity & metabolism
- 2024 AIDS care
- 2024 medRxiv : the preprint server for health sciences
- 2024 BMC public health
- 2024 Bioinformatics (Oxford, England)
- 2024 Studies in health technology and informatics
- 2024 Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
- 2024 Studies in health technology and informatics
- 2024 bioRxiv : the preprint server for biology
- 2024 Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases
- 2024 Proceedings. IEEE International Conference on Healthcare Informatics
- 2024 Briefings in bioinformatics
- 2024 bioRxiv : the preprint server for biology
- 2024 Journal of the American Heart Association
- 2024 AIDS patient care and STDs
- 2024 PLoS computational biology
- 2024 AIDS and behavior
- 2024 AIDS care
- 2024 Proceedings. IEEE International Conference on Healthcare Informatics
- 2023 Research square
- 2023 Journal of the American Medical Informatics Association : JAMIA
- 2023 Frontiers in microbiology
- 2023 PloS one
- 2023 Proceedings of machine learning research
- 2023 AIDS (London, England)
- 2023 Nucleic acids research
- 2023 HIV medicine
- 2023 Integrated environmental assessment and management
- 2023 Viruses
- 2023 European journal of medical research
- 2023 JMIR research protocols
- 2023 International journal of medical informatics
- 2023 JMIR formative research
- 2023 BMC medical informatics and decision making
- 2023 AMIA … Annual Symposium proceedings. AMIA Symposium
- 2022 IEEE International Conference on Bioinformatics and Biomedicine workshops. IEEE International Conference on Bioinformatics and Biomedicine
- 2022 Briefings in bioinformatics
- 2022 Microbiome
- 2022 International journal of environmental research and public health
- 2022 JCO clinical cancer informatics
- 2022 Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
- 2022 BMJ open
- 2022 Bioinformatics (Oxford, England)
- 2022 AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science
- 2022 Microbiology spectrum
- 2022 AIDS and behavior
- 2022 Frontiers in bioengineering and biotechnology
- 2022 Proceedings. IEEE International Conference on Bioinformatics and Biomedicine
- 2022 AMIA … Annual Symposium proceedings. AMIA Symposium
- 2022 Infectious diseases and therapy
- 2022 International journal of medical informatics
- 2022 Artificial intelligence in medicine
- 2022 GigaScience
- 2022 Scientific reports
- 2022 International journal of medical informatics
- 2021 HIV medicine
- 2021 Journal of the American Medical Informatics Association : JAMIA
- 2021 The Journal of infectious diseases
- 2021 Environmental research
- 2021 Computer methods and programs in biomedicine update
- 2021 Methods of information in medicine
- 2021 … IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics
- 2021 IEEE/ACM transactions on computational biology and bioinformatics
- 2021 BMC bioinformatics
- 2021 NPJ digital medicine
- 2021 Frontiers in genetics
- 2021 Open forum infectious diseases
- 2021 Journal of the American Medical Informatics Association : JAMIA
- 2021 AMIA … Annual Symposium proceedings. AMIA Symposium
- 2021 International journal of medical informatics
- 2021 ICMHI 2021 : 2021 5th International Conference on Medical and Health Informatics : May 14-16, 2021, Kyoto, Japan. International Conference on Medical and Health Informatics (5th : 2021 : Online)
- 2021 Journal of neurovirology
- 2021 Journal of biomedical informatics
- 2020 mSphere
- 2020 Pathogens and global health
- 2020 Proceedings of the National Academy of Sciences of the United States of America
- 2020 Epidemiology (Cambridge, Mass.)
- 2020 The Journal of asthma : official journal of the Association for the Care of Asthma
- 2020 Journal of the American College of Cardiology
- 2020 Bioinformatics
- 2020 AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science
- 2020 Journal of the American Medical Informatics Association : JAMIA
- 2020 International journal of medical informatics
- 2020 Viruses
- 2020 bioRxiv : the preprint server for biology
- 2020 Environmental research
- 2020 JMIR Public Health and Surveillance
- 2020 Nature Machine Intelligence
- 2020 JMIR Public Health and Surveillance
- 2020 Journal of the American Medical Informatics Association : JAMIA
- 2020 Health informatics journal
- 2020 Health informatics journal
- 2020 Epidemiology (Cambridge, Mass.)
- 2020 BMC medical informatics and decision making
- 2020 Environment international
- 2020 JMIR Public Health and Surveillance
- 2019 ACM-BCB … … : the … ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine
- 2019 Studies in health technology and informatics
- 2019 Investigative ophthalmology & visual science
- 2019 Journal of clinical epidemiology
- 2019 International journal for quality in health care : journal of the International Society for Quality in Health Care
- 2019 Journal of psychiatric research
- 2019 Palgrave Communications
- 2019 Psychiatry research
- 2019 AIDS patient care and STDs
- 2019 American journal of public health
- 2019 Communications Biology
- 2019 Applied and environmental microbiology
- 2019 Current medicinal chemistry
- 2019 Bioinformatics (Oxford, England)
- 2019 Studies in health technology and informatics
- 2019 Rhode Island medical journal (2013)
- 2019 PloS one
- 2019 Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
- 2019 PloS one
- 2019 Cancer medicine
- 2019 Hormones & cancer
- 2019 ACM-BCB … … : the … ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine
- 2019 BMC medical informatics and decision making
- 2019 International journal of medical informatics
- 2018 Epidemiology and Infection
- 2018 PeerJ
- 2018 Drug safety
- 2018 Proceedings. IEEE International Conference on Bioinformatics and Biomedicine
- 2018 Microbial pathogenesis
- 2018 PloS one
- 2018 BMC medical informatics and decision making
- 2018 AMIA … Annual Symposium proceedings. AMIA Symposium
- 2018 Cancer medicine
- 2018 BMC medical informatics and decision making
- 2018 Journal of psychiatric research
- 2017 Journal of Medical Internet Research
- 2017 Biomedicine hub
- 2017 BMC infectious diseases
- 2017 Global health research and policy
- 2017 Scientific reports
- 2017 Studies in health technology and informatics
- 2017 Scientific reports
- 2017 Transplantation proceedings
- 2017 International journal of cancer
- 2017 Procedia computer science
- 2016 BioData mining
- 2016 Global health research and policy
- 2016 Annals of epidemiology
- 2016 PloS one
- 2016 Medicine
- 2016 Proceedings of the National Academy of Sciences of the United States of America
- 2016 European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology
- 2016 Current HIV research
- 2016 BMC medicine
- 2015 Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases
- 2015 Open forum infectious diseases
- 2015 Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology
- 2015 The Journal of allergy and clinical immunology
- 2015 Current allergy and asthma reports
- 2015 Studies in health technology and informatics
- 2015 BMC ophthalmology
- 2014 AMIA … Annual Symposium proceedings. AMIA Symposium
- 2014 The Journal of general virology
- 2014 BMC infectious diseases
- 2014 BMC medical genomics
- 2014 mBio
- 2014 BMC public health
- 2014 Journal of Medical Primatology
- 2014 Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology
- 2014 BMC medical informatics and decision making
- 2013 European Physical Journal-Special Topics
- 2013 Scientific reports
- 2013 The Journal of general virology
- 2013 Scientific reports
- 2013 The Journal of infectious diseases
- 2013 European Physical Journal-Special Topics
- 2013 PloS one
- 2013 American journal of respiratory and critical care medicine
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2013
A single early introduction of HIV-1 subtype B into Central America accounts for most current cases.Journal of virology
- 2012 Journal of the International Aids Society
- 2012 Bioinformatics (Oxford, England)
- 2012 Journal of acquired immune deficiency syndromes (1999)
- 2012 BMC infectious diseases
- 2012 Intervirology
- 2012 Evolutionary bioinformatics online
- 2012 International Journal of Biomathematics
- 2012 Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases
- 2012 AIDS reviews
- 2012 PloS one
- 2012 Journal of virology
- 2011 Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases
- 2011 HIV medicine
- 2011 Antiviral therapy
- 2011 HIV medicine
- 2011 The Journal of antimicrobial chemotherapy
- 2011 Pharmacological research
- 2011 BMC bioinformatics
- 2011 European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology
- 2011 PloS one
- 2011 BMC medical informatics and decision making
- 2011 Nature communications
- 2011 Virology journal
- 2010 PloS one
- 2010 Current opinion in HIV and AIDS
- 2010 HIV medicine
- 2010 Journal of medical virology
- 2010 Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
- 2010 PloS one
- 2010 Retrovirology
- 2010 PloS one
- 2009 AIDS research and human retroviruses
- 2009 Journal of virology
- 2009 AIDS research and human retroviruses
- 2009 Bioinformatics (Oxford, England)
- 2009 The Journal of antimicrobial chemotherapy
- 2009 AIDS research and human retroviruses
- 2009 Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology
- 2009 Retrovirology
- 2009 HIV medicine
- 2009 Antiviral therapy
- 2009 Infection
- 2009 Neurology
- 2009 Antiviral therapy
- 2009 AIDS (London, England)
- 2008 Bioinformatics (Oxford, England)
- 2008 PloS one
- 2007 The Journal of infectious diseases
- 2007 Scandinavian journal of infectious diseases
- 2007 Antiviral therapy
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Jan 2025
ACTIVE
Utilizing phylodynamic and causal artificial intelligence methods for predicting and characterizing antibiotic resistant bacterial transmission within and beyond hospital settingsNATL INST OF HLTH NIAID · Other
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Oct 2024
ACTIVE
Genomic characterization of antimicrobial resistance and viral co-infection patterns of Streptococcus pneumoniae by next-generation sequencing and artificial intelligence.MERCK SHARP & DOHME · Co-Investigator
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Sep 2024
ACTIVE
Precision HIV Prevention: Piloting a youth learning health communityFL STATE UNIV · Co-Investigator
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Jul 2024
ACTIVE
AI-based Clinical decision support to idenTify wOmeN for HIV testing and PrEP in Florida (ACTION-HIV)NATL INST OF HLTH NIMH · Co-Investigator
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Jun 2024
ACTIVE
Machine learning-based brain aging morphological signatures of chronic musculoskeletal painNATL INST OF HLTH NIA · Other
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May 2024
ACTIVE
Understanding the Impact of Obesogenic Environments on the Incidence of Colorectal CancerFL DEPT OF HLTH BANKHEAD-COLEY CANCER RE · Co-Investigator
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Apr 2024
ACTIVE
Collaboration with UCLA and Dr. LuceroUNIV OF CALIFORNIA LOS ANGELES · Principal Investigator
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Sep 2023
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Apr 2024
Iron-CLAD: securely advancing AoU participant characterization with proven platforms and collaborations (All of Us Center for Linkage and Acquisition of Data (CLAD))UNIV OF COLORADO DENVER & ANSCHUTZ MED · Project Manager
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Jun 2023
ACTIVE
A mixed methods study of syndemic factors associated with social support and viral suppression among Black men who have sex with men (MSM) in FloridaNATL INST OF HLTH NIDA · Other
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Apr 2023
ACTIVE
Artificial Intelligence and Counterfactually Actionable Responses to End HIV (AICARE-HIV)NATL INST OF HLTH NIAID · Principal Investigator
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Jan 2023
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Jun 2024
Twitter networks and dynamics of discussions related to pesticides*SYNGENTA CROP PROTECTION LLC · Principal Investigator
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Nov 2022
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Nov 2024
Interest and uptake of long-acting antiretroviral therapy (ART) among people with HIV in FloridaMERCK AND COMPANY INC RES LAB · Principal Investigator
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Sep 2022
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Dec 2023
Workshop on AI Governance in For-profit and Not-for-profit OrganizationsNATL SCIENCE FOU · Co-Project Director/Principal Investigator
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Aug 2022
ACTIVE
CODUS – HIV outcome quality measure evaluation and stigmaFL DEPT OF HLTH · Principal Investigator
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Jul 2022
ACTIVE
A Phylodynamic Artificial Intelligence framework to predict evolution of SARS-CoV-2 variants of concern in Immunocompromised persons with HIV (PhAI-CoV)NATL INST OF HLTH NIAID · Principal Investigator
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Sep 2021
ACTIVE
Southern HIV and Alcohol Research Consortium Biomedical Data RepositoryNATL INST OF HLTH NIAAA · Co-Investigator
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Sep 2021
ACTIVE
Interventions to improve alcohol-related comorbidities along the gut-brain axis in persons with HIV infectionNATL INST OF HLTH NIAAA · Co-Investigator
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Jun 2021
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Aug 2022
Expanding genomic surveillance and epidemiology capacity in Central Florida and Southeastern USTHE ROCKEFELLER FOU · Co-Investigator
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May 2021
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Apr 2022
Evaluating Public Perception of Pesticides Using Social Media Data Analysis*SYNGENTA CROP PROTECTION LLC · Principal Investigator
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Apr 2021
ACTIVE
Advancing Interdisciplinary Science of Aging through Identification of Iatrogenic Complications: The UF EHR Clinical Data Infrastructure for Enhanced Patient Safety among the Elderly (UF-ECLIPSE)NATL INST OF HLTH NIA · Co-Investigator
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Jan 2021
ACTIVE
SCH: INT: Enabling real-time surveillance of antimicrobial resistanceNATL SCIENCE FOU · Co-Project Director/Principal Investigator
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Sep 2020
ACTIVE
Using Real-world Data to Assess the Burden of Diabetes in Children and Adolescents in FloridaCTRS FOR DISEASE CONTROL AND PREVENTION · Co-Investigator
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Aug 2020
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Jan 2024
Using Electronic Health Records from a Large Clinical Data Research Network to Understand Cancer Burden and Cancer Risks Among Transgender and Gender Nonconforming (TGNC) IndividualsNATL INST OF HLTH NCI · Co-Investigator
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May 2020
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Mar 2022
Spatiotemporal analysis of HIV health and quality of life outcomes in FloridaFL DEPT OF HLTH · Principal Investigator
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May 2020
ACTIVE
Forecasting trajectories of HIV transmission networks with a novel phylodynamic and deep learning frameworkNATL INST OF HLTH NIAID · Principal Investigator
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Apr 2020
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Mar 2023
RAPID: Dynamic Identification of SARS-COV-2 Transmission Epicenters in Presence of Spatial Heterogeneity (COV-DYNAMITE)NATL SCIENCE FOU · Principal Investigator
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Dec 2019
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Nov 2023
Artificial Intelligence-aided Personalization on Dual Antiplatelet Therapy for Patients Underwent Coronary Stent Implantation Using Large-scale Electronic Health RecordsUNIV OF TEXAS HLTH SCI CTR AT HOUSTON · Co-Investigator
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Oct 2019
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May 2020
Miami Center for AIDS ResearchUNIV OF MIAMI · Principal Investigator
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Apr 2019
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Mar 2021
Advancing Interdisciplinary Science of Aging through Identification of Iatrogenic Complications: The UF EHR Clinical Data Infrastructure for Enhanced Patient Safety among the Elderly (UF-ECLIPSE)NATL INST OF HLTH NIA · Co-Investigator
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Jan 2019
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Dec 2021
Management of Standardized Evaluation of Retroviral HIV InfectionFONDAZIONE M.I.S.I. · Principal Investigator
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Nov 2018
ACTIVE
Developing Computational Methods for Surveillance of Antimicrobial Resistant AgentsNATL INST OF HLTH NIAID · Principal Investigator
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May 2018
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Mar 2020
Spatiotemporal analysis of HIV drug resistance in FloridaFL DEPT OF HLTH · Principal Investigator
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Feb 2018
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Jan 2022
HIV Dynamic Modelling for Identification of Transmission Epicenters (HIV-DYNAMITE)NATL INST OF HLTH NIAID · Principal Investigator
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Sep 2017
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Jun 2024
Viral evolution in peripheral macrophages and brain during progression to AIDSNATL INST OF HLTH NINDS · Co-Investigator
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Sep 2017
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Aug 2022
A Person-Centric Prediction Model of Job Loss based on Social Media Data and Linguistic and Linguistic AnalyticsNATL SCIENCE FOU · Principal Investigator
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May 2017
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May 2020
Miscellaneous DonorsMISCELLANEOUS DONORS · Principal Investigator
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Mar 2017
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Dec 2018
Strengthening the UF Health Nursing Academic Partnership Phase IV: Generating Practice-Based Evidence for Quality Improvement (Stage 2)UF HEALTH SHANDS HOSPITAL · Co-Investigator
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Jun 2016
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Oct 2017
Mapping and modeling Bacillus anthracis and Clostridiumbotulinum across North Africa and the Middle East with high resolutiongenetic sequencing and spatial analysis.US DEPT OF HOMELAND SECURITY · Project Manager
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Apr 2016
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Mar 2018
Enhancing Population Impact of HIV Pre-Exposure Prophylaxis ImplementationBROWN UNIV · Principal Investigator
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Jan 2016
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Dec 2018
Big data approach for correlating gut microbiota with epithelial methylation patternNATL INST OF HLTH NCI · Principal Investigator
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Jan 2016
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Dec 2021
ufhcc-ioa cancer-aging collaborative team grantsUF HEALTH SHANDS HOSPITAL · Project Manager
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Jul 2015
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Jul 2016
EuResist Engine retrainingEURESIST NETWORK GEIE · Principal Investigator
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Jun 2015
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May 2018
Virus discovery and epidemic tracing from high throughput metagenomic sequencingEUROPEAN COMMISSION · Principal Investigator
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Mar 2015
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Mar 2018
Management of standardized evaluation of retroviral HIV infectionFONDAZIONE M.I.S.I. · Principal Investigator
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Dec 2011
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Jun 2016
Cholera Transmission in Gressier Region, HaitiNATL INST OF HLTH NIAID · Project Manager
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2008
Doctor of Philosophy in Computer Science Engineering and AutomationRoma Tre University
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2003
Master's in Computer Science EngineeringRoma Tre University
Learn more about artificial intelligence at PHHP from Dean Mattia Prosperri.
AI Hires
Aprinda I Queen Ph.D.
Takis Benos
Li Chen
Joseph M Gullett Ph.D.
Noah Hammarlund
Muxuan Liang
Zhoumeng Lin BMed, PhD, DABT, CPH, ERT
Feifei Xiao
Sai Zhang
PHHP Artificial Intelligence Work Group and Events
UF PHHP
Artificial Intelligence Work Group
The UF-PHHP-AI-WG is designed to bring together interdisciplinary expertise, foster novel ideas and engage both established and early career investigators.

UF PHHP workgroup
AI Seminar Series
The University of Florida College of Public Health and Health Professions Artificial Intelligence Work Group is pleased to host presentations from renowned experts in health care and public health AI. These presentations are free and open to the campus community.

Annual AI Workshop
DAISY
DAISY is a highly interdisciplinary event whose main theme evolves every year based on top AI trends and challenges. Over the past five years, DAISY has covered personalized AI, bias in AI, and governance in AI — across medicine, public health, and business perspectives.

Funding Opportunities
FACULTY SUPPORT
PHHP Research Innovation Fund
The Innovation Fund is designed to provide funding to PHHP faculty for pilot/feasibility studies to enhance their opportunity for obtaining extramural research funding. The program is organized around three major themes: artificial intelligence, direct clinical impact and general topics in public health and health professions.
Ph.D. student support
Ph.D. Fellowship in Artificial Intelligence
The PHHP Ph.D. Fellowship in Artificial Intelligence program fosters doctoral students’ training and research in AI and encourages out-of-the-box ideas. The awards are designed to offer an opportunity for academic growth, professional networking, results dissemination and research support for students and mentors.
Applications for the 2025 cycle will be accepted December 15 through March 1.
Professional doctoral support
Professional Doctoral Fellowship in Artificial Intelligence
The PHHP Professional Doctoral Fellowship in Artificial Intelligence (AI) aims at fostering students’ training and applied research in AI, relative to topics in public health and health professions. The long-term goal is to build a legacy of excellence in AI for the PHHP Professional Doctoral programs with national and international recognition. In the short-term, the awards provide an opportunity for completing specific projects in line with the student’s coursework and professional growth.
Applications are accepted year-round.
Education
Undergraduate
The college has launched a certificate program for undergrads titled Artificial Intelligence in Healthcare and Public Health. The nine-credit certificate includes three courses: “Higher Thinking for Healthy Humans: AI in Healthcare and Public Health,” “Ethics in AI: Who’s Protecting Our Health” and “Data Visualization in the Health Sciences.”
Graduate
The college is developing a certificate in Artificial Intelligence Research Methodologies in Healthcare and Public Health for graduate students that will focus on using AI to answer health-related research questions. Once these are fully established, the courses will be developed and submitted to the Graduate Council for approval.
UF Health IDR ATLAS Health Data Research Platform
UF Health IDR ATLAS Health Data Research Platform
ATLAS is a free, publicly available, web-based tool developed by the Observational Health Data Sciences and Informatics (OHDSI) community with the aim to facilitate the design and execution of analyses on standardized, patient-level, observational data. If you are familiar with i2b2, ATLAS can be considered its evolved version, overcoming many of i2b2’s limitations.
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